.. SMAP documentation master file, created by sphinx-quickstart on Wed Aug 5 13:28:17 2020. You can adapt this file completely to your liking, but it should at least contain the root `toctree` directive. .. _SMAPpairwiseindex: Pairwise ======== | This is the manual for the component **SMAP relatedness pairwise** of the SMAP package. | **SMAP relatedness pairwise** was designed to create genetic relationship matrices (pairwise) based on multi-allelic haplotypes generated by **SMAP haplotype-sites** or **SMAP haplotype-window**. .. toctree:: :maxdepth: 2 :caption: Contents: pairwise_scope_usage pairwise_feature_description pairwise_HIW pairwise_examples pairwise_faq