Installation & Quick Start

This quickstart guide is for installing and testing various modules of the SMAP package.

Install the SMAP package according to these installation instructions.

Test data may be downloaded from Zenodo (link).

Contents:

• Installation
• Quick start
• Analysis of simulated GBS data
  • SMAP delineate
  • SMAP haplotype-sites
• Analysis of real GBS data
  • SMAP delineate
  • SMAP compare
  • SMAP haplotype-sites
• Analysis of real CRISPR/Cas genome editing data
  • SMAP haplotype-window
  • SMAP effect-prediction