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SMAP effect-prediction
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SMAP effect-prediction
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SMAP effect-prediction
This is the manual for the effect-prediction component of the SMAP package.
SMAP effect-prediction
is designed to provide biological interpretation of the haplotype call tables created by
SMAP haplotype-window
.
Contents:
Scope & Usage
Scope
Integration in the SMAP workflow
Guidelines for SMAP effect-prediction
Commands & options
Example commands
Output
Feature Description
Interpretation of the induced mutation spectrum in a plant collection
Concepts for “cleaning up”
How It Works
Preparing input files with SMAP design and SMAP haplotype-window
The subsequent steps of SMAP effect-prediction
Examples
Illustration of SMAP effect-prediction
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