Feature Description
SMAP compare only needs two final BED files containing loci, created with SMAP delineate.
Examples of input BED files are shown below:
Reference |
Start |
End |
MergedCluster_name |
Mean_read_depth |
Strand |
SMAPs |
Completeness |
nr_SMAPs |
Name |
---|---|---|---|---|---|---|---|---|---|
scaffold_1 |
41455 |
41541 |
scaffold_1:41456-41541_+ |
604 |
+ |
41456,41541 |
8 |
2 |
48_individuals |
scaffold_1 |
41486 |
41569 |
scaffold_1:41487-41569_- |
579 |
- |
41487,41569 |
3 |
2 |
48_individuals |
scaffold_1 |
42704 |
42778 |
scaffold_1:42705-42778_+ |
61 |
+ |
42705,42778 |
2 |
2 |
48_individuals |
scaffold_1 |
42798 |
42884 |
scaffold_1:42799-42884_- |
72 |
- |
42799,42884 |
2 |
2 |
48_individuals |
scaffold_1 |
77857 |
77943 |
scaffold_1:77858-77943_+ |
43 |
+ |
77858,77943 |
3 |
2 |
48_individuals |
scaffold_1 |
156606 |
156692 |
scaffold_1:156607-156692_- |
1067 |
- |
156607,156692 |
37 |
2 |
48_individuals |
scaffold_12 |
2530 |
2596 |
scaffold_12:2531-2596_+ |
39 |
+ |
2531,2596 |
3 |
2 |
48_individuals |
scaffold_12 |
33659 |
33725 |
scaffold_12:33660-33725_+ |
18 |
+ |
33660,33725 |
1 |
2 |
48_individuals |
scaffold_12 |
34732 |
34806 |
scaffold_12:34733-34806_+ |
890 |
+ |
34733,34806 |
45 |
2 |
48_individuals |
scaffold_12 |
34732 |
34806 |
scaffold_12:34733-34806_- |
768 |
- |
34733,34806 |
47 |
2 |
48_individuals |
scaffold_34 |
36267 |
36358 |
scaffold_34:36268-36358_+ |
1169 |
+ |
36268,36296,36358 |
36 |
3 |
48_individuals |
scaffold_34 |
46267 |
46334 |
scaffold_34:46268-46334_- |
150 |
- |
46268,46334 |
48 |
2 |
48_individuals |
scaffold_72 |
23080 |
23166 |
scaffold_72:23081-23166_- |
1423 |
- |
23081,23156,23166 |
48 |
3 |
48_individuals |
Reference |
Start |
End |
MergedCluster_name |
Mean_read_depth |
Strand |
SMAPs |
Completeness |
nr_SMAPs |
Name |
---|---|---|---|---|---|---|---|---|---|
scaffold_1 |
41455 |
41541 |
scaffold_1:41456-41541_+ |
42 |
+ |
41456,41541 |
1 |
2 |
16_pools |
scaffold_1 |
41486 |
41569 |
scaffold_1:41487-41569_- |
111 |
- |
41487,41569 |
3 |
2 |
16_pools |
scaffold_1 |
156606 |
156692 |
scaffold_1:156607-156692_- |
915 |
- |
156607,156692 |
16 |
2 |
16_pools |
scaffold_12 |
34732 |
34806 |
scaffold_12:34733-34806_+ |
2403 |
+ |
34733,34806 |
16 |
2 |
16_pools |
scaffold_12 |
34732 |
34806 |
scaffold_12:34733-34806_- |
2284 |
- |
34733,34806 |
16 |
2 |
16_pools |
scaffold_34 |
36267 |
36358 |
scaffold_34:36268-36358_+ |
1242 |
+ |
36268,36296,36358 |
16 |
3 |
16_pools |
scaffold_34 |
46267 |
46334 |
scaffold_34:46268-46334_- |
809 |
- |
46268,46334 |
16 |
2 |
16_pools |
scaffold_72 |
23080 |
23166 |
scaffold_72:23081-23166_- |
1882 |
- |
23081,23156,23166 |
16 |
3 |
16_pools |