Welcome to SMAP’s documentation!

Contents:

• Home
  • Introduction
  • Global overview
  • Detailed information of modules
  • Recommended reading
• Installation & Quick Start
  • Installation
  • Quick start
  • Analysis of simulated GBS data
  • Analysis of real GBS data
  • Analysis of real CRISPR/Cas genome editing data
• Tutorial
  • Design a CRISPR/Cas experiment with gRNA and HiPlex panels (potato)
  • Variety identification for cultivated Coffea arabica using HiPlex amplicon sequencing
  • Genetic diversity and composition analysis for wild and cultivated Coffea canephora
  • Population genetics of bullfrog, an invasive species
• SMAP delineate
  • Scope & Usage
  • Feature Description
  • How It Works
  • Examples
  • Recommendations & Troubleshooting
• SMAP sliding-frames
  • Scope & Usage
  • Feature Description
  • How It Works
  • Examples
  • Recommendations & Troubleshooting
• SMAP compare
  • Scope & Usage
  • Feature Description
  • How It Works
  • Examples
• SMAP haplotype-sites
  • Scope & Usage
  • Feature description
  • How It Works
  • Examples
  • Recommendations & Troubleshooting
• SMAP snp-seq
  • Scope & Usage
  • Feature Description
  • How It Works
  • Examples
  • Recommendations & Troubleshooting
• SMAP target-selection
  • Scope & Usage
  • Feature Description
  • How It Works
  • Examples
  • Recommendations & Troubleshooting
• SMAP design
  • Scope & Usage
  • Feature Description
  • How It Works
  • Examples
• SMAP haplotype-window
  • Scope & Usage
  • Feature description
  • How It Works
  • Recommendations & Troubleshooting
• SMAP effect-prediction
  • Scope & Usage
  • Feature Description
  • How It Works
  • Examples
• SMAP relatedness
  • SMAP relatedness umap
  • SMAP relatedness pairwise
• SMAP chromplot
  • Scope & Usage
  • Feature Description
  • How It Works
  • Examples